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latest sleepqa#1128
joyan2 wants to merge 4 commits intosunlabuiuc:masterfrom
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@joyan2 joyan2 commented Apr 23, 2026

Contributor: Jeffrey Yan
Contribution Type: Full Pipeline
Description: Implements the SleepQA dataset and an Extractive QA task, as well as a BioBERT + PubMedBERT pipeline.

Files to Review:

  • pyhealth/datasets/sleepqa.py - Core dataset and indexing logic.
  • pyhealth/datasets/configs/sleepqa.yaml - Table configuration.
  • pyhealth/tasks/sleepqa_extractive_qa.py - Task definition and processor mapping.
  • pyhealth/models/sleepqa_biobert.py - BioBERT model implementation.
  • tests/core/test_sleepqa.py - Synthetic data test suite.
  • pyhealth/datasets/init.py - Registry update.
  • pyhealth/tasks/init.py - Registry update.

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