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Add CCEP ECoG dataset, Localize SOZ task, and SPES models #1027

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Add CCEP ECoG dataset, Localize SOZ task, and SPES models #1027

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26a4eb7
Add CCEPECoGDataset with BIDS validation and metadata indexing
dtavana Apr 1, 2026
bbc09a5
Add LocalizeSOZ task with stimulation data processing and SOZ localiz…
ksplinter2000 Apr 5, 2026
1257de0
Update test_ccep_ecog.py
ksplinter2000 Apr 16, 2026
43ba28c
Add SPESResNet and SPESTransformer models with CCEP ECoG training exa…
mkoretsky1 Apr 18, 2026
297d426
add rst files for model
mkoretsky1 Apr 19, 2026
1c4b6da
Fixing blockers and style
mkoretsky1 Apr 19, 2026
fc2b133
Fix dual import on model init
mkoretsky1 Apr 19, 2026
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1 change: 1 addition & 0 deletions docs/api/datasets.rst
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Expand Up @@ -241,6 +241,7 @@ Available Datasets
datasets/pyhealth.datasets.PhysioNetDeIDDataset
datasets/pyhealth.datasets.TUABDataset
datasets/pyhealth.datasets.TUEVDataset
datasets/pyhealth.datasets.CCEPECoGDataset
datasets/pyhealth.datasets.ClinVarDataset
datasets/pyhealth.datasets.COSMICDataset
datasets/pyhealth.datasets.TCGAPRADDataset
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9 changes: 9 additions & 0 deletions docs/api/datasets/pyhealth.datasets.CCEPECoGDataset.rst
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pyhealth.datasets.CCEPECoGDataset
=================================

The open CCEP ECoG dataset of electrocorticography (ECoG) recordings from patients undergoing epilepsy surgery, refer to `OpenNeuro <https://openneuro.org/datasets/ds004080>`_ for more information.

.. autoclass:: pyhealth.datasets.CCEPECoGDataset
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2 changes: 2 additions & 0 deletions docs/api/models.rst
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Expand Up @@ -206,3 +206,5 @@ API Reference
models/pyhealth.models.BIOT
models/pyhealth.models.unified_multimodal_embedding_docs
models/pyhealth.models.califorest
models/pyhealth.models.SPESResNet
models/pyhealth.models.SPESTransformer
9 changes: 9 additions & 0 deletions docs/api/models/pyhealth.models.SPESResNet.rst
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pyhealth.models.SPESResNet
==========================

Multi-scale 1D ResNet for electrode-level seizure onset zone localization from CCEP ECoG data.

.. autoclass:: pyhealth.models.SPESResNet
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9 changes: 9 additions & 0 deletions docs/api/models/pyhealth.models.SPESTransformer.rst
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pyhealth.models.SPESTransformer
================================

CNN-Transformer hybrid for electrode-level seizure onset zone localization from CCEP ECoG data.

.. autoclass:: pyhealth.models.SPESTransformer
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4 changes: 4 additions & 0 deletions docs/api/tasks.rst
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Expand Up @@ -212,7 +212,11 @@ Available Tasks
COVID-19 CXR Classification <tasks/pyhealth.tasks.COVID19CXRClassification>
DKA Prediction (MIMIC-IV) <tasks/pyhealth.tasks.dka>
Drug Recommendation <tasks/pyhealth.tasks.drug_recommendation>
EEG Abnormal <tasks/pyhealth.tasks.EEG_abnormal>
EEG Events <tasks/pyhealth.tasks.EEG_events>
Localize Siezure Onset Zone (SOZ) <tasks/pyhealth.tasks.LocalizeSOZ>
Length of Stay Prediction <tasks/pyhealth.tasks.length_of_stay_prediction>
Localize Seizure Onset Zone (SOZ) <tasks/pyhealth.tasks.LocalizeSOZ>
Medical Transcriptions Classification <tasks/pyhealth.tasks.MedicalTranscriptionsClassification>
Mortality Prediction (Next Visit) <tasks/pyhealth.tasks.mortality_prediction>
Mortality Prediction (StageNet MIMIC-IV) <tasks/pyhealth.tasks.mortality_prediction_stagenet_mimic4>
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7 changes: 7 additions & 0 deletions docs/api/tasks/pyhealth.tasks.LocalizeSOZ.rst
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pyhealth.tasks.LocalizeSOZ
==========================

.. autoclass:: pyhealth.tasks.localize_soz.LocalizeSOZ
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