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280 followers · 335 following

Achievements

Achievement: Pull Sharkx4Achievement: Pair Extraordinairex4Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx4Achievement: Pair Extraordinairex4Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Organizations

@SciLifeLab @NationalGenomicsInfrastructure @bioinfo-fr @bioconda @nf-core @NordicCompBio

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maxulysse/README.md

πŸ‘‹ Hi there πŸ§‘β€πŸ’»

  • I'm a bioinformatician, from Marseille πŸ‡«πŸ‡· , living in Stockholm πŸ‡ΈπŸ‡ͺ
  • I'm interested in Reproducible Research (and obviously open-source), Cancer, Automation, Containers, Data Integration, Visualization and much more...
  • I enjoy doing pipelines with Nextflow, that are reproducible using Conda, Docker, Singularity... and can run anywhere, including AWS, GCP, Azure...
  • I'm part of the core team that administrates the @nf-core community

:octocat: My Github stats πŸ“Š

My Awesome Stats

git.io/awesome-stats-card

πŸ”Ž Find me around the web 🌎

  • I share the occasional blog post and my presentations on my own Astro website
  • I sometimes share informations on LinkedIn
  • I keep track of my publications with ORCID and Google Scholar
  • I ΞΌblog, but mainly RT on BlueSky, Mastodon or Twitter/X.
  • I share food and cats pictures on Instagram with sometimes an occasional landscape
  • If you find anything in my repo useful and want to say thanks, you can Buy me a coffee

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  1. maxulysse.github.io maxulysse.github.io Public

    My own astro personnal website >>>

    Astro 2 4

  2. compile-latex compile-latex Public

    Simple beamer/latex compiler using Nextflow, provided with Docker container

    Nextflow 8

  3. nf-core/sarek nf-core/sarek Public

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Nextflow 571 532

  4. nf-core/rnavar nf-core/rnavar Public

    gatk4 RNA variant calling pipeline

    Nextflow 60 48

  5. nf-core/seqinspector nf-core/seqinspector Public

    Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core …

    Nextflow 25 43

  6. nf-core/references nf-core/references Public

    nf-core/references is a bioinformatics pipeline that build references, for multiple use cases

    Nextflow 19 8