Job Traceability, Management, and Audibility Overhaul#645

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bencap wants to merge 135 commits intorelease-2026.2.0from

feature/bencap/627/job-traceability

Commits on Apr 16, 2026

Commits on Apr 17, 2026

feat(worker): add variant translation worker job for PA<->CA allele relationships
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refactor(annotations): rename success_data to annotation_metadata
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feat(job): add SYSTEM_MAINTENANCE job type to JobType enum
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feat(decorator): add job_id validation to with_guaranteed_job_run_record
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feat(jobs): rename cleanup_stalled_jobs cron job and add standalone job definition
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feat(pipeline): add map_annotate_score_set pipeline with variant mapping job definition
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feat(clingen): enhance CAR submission handling with error logging and partial failure support
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feat(decorators): implement task-local session management in ensure_session_ctx
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build(dependencies): pin setuptools version to avoid compatibility issues with eutils
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fix(pipeline): commit status changes to prevent deadlocks during job enqueueing
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feat(job-management): add cancellation check for jobs in terminal state before execution
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Refactor job and pipeline management documentation
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Commits on Apr 18, 2026

feat(clinvar): enhance NCBI session management with retry strategy and custom headers
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Commits on Apr 19, 2026

Commits on Apr 20, 2026

Commits on Apr 21, 2026

refactor(cleanup): enhance handling of stalled pipeline jobs based on dependency states
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Commits on Apr 22, 2026