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@PNNL-CompBio

Computational Biology @Pacific Northwest National Laboratory

This site is for repositories for computational biology work performed at the Pacific Northwest National Laboratory, a Department of Energy National Laboratory.

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  1. 3D_Scaffold 3D_Scaffold Public

    Python 26 4

  2. coderdata coderdata Public

    Dataset package for facile training and testing of machine learning/AI algorithms that predict drug response in cancer model systems.

    Jupyter Notebook 21 4

  3. Snekmer Snekmer Public

    Pipeline to apply encoded Kmer analysis to protein sequences

    Python 17 2

  4. ML_UVvisModels ML_UVvisModels Public

    Jupyter Notebook 17 3

  5. decomprolute decomprolute Public archive

    A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.

    Common Workflow Language 16 5

  6. pf-gnn_pli pf-gnn_pli Public

    Python 12 5

Repositories

Showing 10 of 97 repositories
  • srpAnalytics Public

    This repository contains the code necessary to process any new data for the Superfund Research Program Analytics Portal.

    PNNL-CompBio/srpAnalytics's past year of commit activity
    Python 7 1 10 0 Updated Sep 8, 2026
  • amlMultidrugResistance Public
    PNNL-CompBio/amlMultidrugResistance's past year of commit activity
    Jupyter Notebook 3 0 0 1 Updated Sep 3, 2026
  • spammR Public

    Spatial Analysis of Multiomics Measurement in R

    PNNL-CompBio/spammR's past year of commit activity
    R 7 BSD-2-Clause 1 7 0 Updated Sep 3, 2026
  • bmdrc Public

    Python library for the calculation of benchmark dose response curves

    PNNL-CompBio/bmdrc's past year of commit activity
    HTML 3 BSD-2-Clause 2 0 0 Updated Sep 3, 2026
  • MPNST-PDX-MT Public

    Here we have our analysis and modeling of drug response in MPNST PDX-MT samples

    PNNL-CompBio/MPNST-PDX-MT's past year of commit activity
    R 2 BSD-3-Clause 0 0 0 Updated Aug 26, 2026
  • smairt-template Public

    The Scientific Method using AI Research Template for cookiecutter

    PNNL-CompBio/smairt-template's past year of commit activity
    Python 4 3 1 1 Updated Aug 24, 2026
  • coderdata Public

    Dataset package for facile training and testing of machine learning/AI algorithms that predict drug response in cancer model systems.

    PNNL-CompBio/coderdata's past year of commit activity
    Jupyter Notebook 21 BSD-2-Clause 4 31 1 Updated Aug 13, 2026
  • lipid_pathway_integrator Public

    Unifies lipid ontology-aware representation and pathway-based multi-omics integration in a single framework

    PNNL-CompBio/lipid_pathway_integrator's past year of commit activity
    Python 1 BSD-2-Clause 0 0 0 Updated Aug 12, 2026
  • HomeownershipDisparity_2015_2019 Public archive

    Code associated with work presented in Race-Specific Risk Factors for Homeownership Disparity in the Continental United States

    PNNL-CompBio/HomeownershipDisparity_2015_2019's past year of commit activity
    HTML 0 MIT 0 1 0 Updated Jul 20, 2026
  • NEATO Public archive
    PNNL-CompBio/NEATO's past year of commit activity
    R 1 0 5 0 Updated Jul 20, 2026
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