feat: Additional information on the table log perforation by arng40 · Pull Request #3966 · GEOS-DEV/GEOS

arng40 · 2026-02-06T10:42:29Z

Add well-subregion & rank informations.
Use of MPI Table.

Before the modification :

--------------------------------------------------------------
|               Well 'EL001_2' Perforation Table             |
|------------------------------------------------------------|
| Perforation  |        Coordinates         |  Well element  |
|--------------|----------------------------|----------------|
|           0  |  [000000, 1000000, -0000]  |             0  |
|           1  |  [000000, 1000000, -0001]  |             1  |
|           2  |  [000000, 1000000, -0002]  |             2  |
|           3  |  [000000, 1000000, -0003]  |             3  |
|           4  |  [000000, 1000000, -0004]  |             4  |
|           5  |  [000000, 1000000, -0005]  |             5  |
|           6  |  [000000, 1000000, -0006]  |             6  |
--------------------------------------------------------------

After

------------------------------------------------------------------------------------------------------------------------
|                                           Well 'EL001_2' Perforation Table                                           |
|----------------------------------------------------------------------------------------------------------------------|
|  Rank  |  Perforation  |  Well element  |        Coordinates         |  Cell region  |  Cell sub-region  |  Cell ID  |
|--------|---------------|----------------|----------------------------|---------------|-------------------|-----------|
|    42  |            0  |             0  |  [000000, 1000000, -0000]  |         Cook  |      7_hexahedra  |  1011111  |
|    42  |            1  |             1  |  [000000, 1000000, -0001]  |         Cook  |      7_hexahedra  |  1011112  |
|    42  |            2  |             2  |  [000000, 1000000, -0002]  |    Johanssen  |      8_hexahedra  |  1011113  |
|    42  |            3  |             3  |  [000000, 1000000, -0003]  |    Johanssen  |      8_hexahedra  |  1011114  |
|    42  |            4  |             4  |  [000000, 1000000, -0004]  |    Johanssen  |      8_hexahedra  |  1011115  |
|    42  |            5  |             5  |  [000000, 1000000, -0005]  |    Johanssen  |      8_hexahedra  |  1011116  |
|    42  |            6  |             6  |  [000000, 1000000, -0006]  |    Johanssen  |      8_hexahedra  |  1011117  |
------------------------------------------------------------------------------------------------------------------------

…tions-table-detail

src/coreComponents/mesh/WellElementSubRegion.hpp

…tions-table-detail

commit 82269bc Merge: 28643c9 cf245f7 Author: Nicola Castelletto <38361926+castelletto1@users.noreply.github.com> Date: Thu Feb 12 17:31:28 2026 -0800 Merge branch 'develop' into feature/rey/negative-pressure-cells commit 28643c9 Merge: 9be8d0b f6d0663 Author: MelReyCG <122801580+MelReyCG@users.noreply.github.com> Date: Thu Feb 12 13:51:40 2026 +0100 Merge branch 'develop' into feature/rey/negative-pressure-cells commit 9be8d0b Merge: fe60222 be45914 Author: MelReyCG <122801580+MelReyCG@users.noreply.github.com> Date: Wed Feb 11 16:52:42 2026 +0100 Merge branch 'develop' into feature/rey/negative-pressure-cells commit fe60222 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon Feb 9 16:14:35 2026 +0100 🔊 pressures/densities equal to 0.0 are also reported (not only negatives) commit 168bd0c Merge: b3094e4 4103efd Author: MelReyCG <122801580+MelReyCG@users.noreply.github.com> Date: Tue Nov 18 11:30:20 2025 +0100 Merge branch 'develop' into feature/rey/negative-pressure-cells commit b3094e4 Merge: 370da84 889ea4e Author: MelReyCG <122801580+MelReyCG@users.noreply.github.com> Date: Wed Nov 5 09:48:33 2025 +0100 Merge branch 'develop' into feature/rey/negative-pressure-cells commit 370da84 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Nov 4 17:10:52 2025 +0100 🐛 unit test merge fix commit 89c5505 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Nov 4 15:17:52 2025 +0100 📝 doc fix commit b5d66be Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Nov 4 14:46:27 2025 +0100 🎨 📝 code style & docs commit b3bfe1a Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Nov 4 14:38:43 2025 +0100 🎨 copilot code checks commit 69cd64c Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Oct 29 10:50:29 2025 +0100 ⚰️ merge missing variable commit c46879b Merge: 9cf5abe 178874f Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Oct 29 10:28:02 2025 +0100 Merge remote-tracking branch 'origin/develop' into feature/rey/negative-pressure-cells commit 9cf5abe Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Oct 28 14:36:31 2025 +0100 🐛 typo 2 commit b78a3d7 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon Oct 27 16:52:03 2025 +0100 📝 small precision on loginfo commit 79e1b11 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Oct 28 14:22:50 2025 +0100 🐛 typo commit 2a45e98 Merge: e443151 7416c57 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Oct 28 11:54:26 2025 +0100 Merge remote-tracking branch 'origin/develop' into feature/rey/negative-pressure-cells commit e443151 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Aug 26 15:46:38 2025 +0200 ♻️ renamings (after Pavel review) commit 7812f75 Merge: f18cb8e 0cb3f1f Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Aug 26 10:46:30 2025 +0200 Merge branch 'develop' into feature/rey/negative-pressure-cells commit f18cb8e Merge: de56d0d 43216af Author: Pavel Tomin <paveltomin@users.noreply.github.com> Date: Thu Aug 7 12:43:10 2025 -0500 Merge branch 'develop' into 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updates commit 937c446 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Jul 17 16:12:09 2025 +0200 ⚰️ removed dead code commit aeb8ea0 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Jul 16 17:21:42 2025 +0200 📦 schema commit 4b46f19 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Jul 16 17:21:18 2025 +0200 🐛 solve a bug where the last line of the table was cut (when the r0 had no content) commit 92e9abb Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Jul 16 17:04:55 2025 +0200 🧪 adding a (failing) test to highlight a bug commit 63fe7e7 Merge: 8d50b4c aa33980 Author: MelReyCG <122801580+MelReyCG@users.noreply.github.com> Date: Wed Jul 16 16:13:07 2025 +0200 Merge branch 'develop' into feature/rey/negative-pressure-cells commit 8d50b4c Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Jul 16 16:11:18 2025 +0200 ♻️ set constant params const commit 89fe094 Merge: ef29d77 7e85e74 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Jul 8 15:50:59 2025 +0200 Merge remote-tracking branch 'origin/develop' into feature/rey/negative-pressure-cells commit ef29d77 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Jul 4 15:55:31 2025 +0200 ranksStrsDisps -> ranksStrsOffsets commit 61c4199 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Jul 4 15:38:45 2025 +0200 📝 doc fix commit 5af2601 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Jul 2 12:05:25 2025 +0200 📝 missing last docs commit de75861 Merge: 8eb526b 125ffb9 Author: MelReyCG <122801580+MelReyCG@users.noreply.github.com> Date: Wed Jul 2 11:52:59 2025 +0200 Merge branch 'develop' into feature/rey/negative-pressure-cells commit 8eb526b Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Jul 2 11:51:48 2025 +0200 🎨 uncrustify commit 411636d Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Jul 2 11:48:22 2025 +0200 📝 Adding las docs commit e5ae68e Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Jul 1 17:54:36 2025 +0200 ✅ adding mpi tables unit test commit 112be17 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Jul 1 17:54:09 2025 +0200 📝 updating documentation commit b086a4f Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Jul 1 15:46:33 2025 +0200 🐛 fixing scarce crash when mpi-tables are constructed from more than 2 ranks commit 0475436 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Jul 1 15:45:59 2025 +0200 ⚰️ unused variables commit 72e8ecd Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Jun 6 10:22:27 2025 +0200 💄 transposing table layout for clarity (user review) commit 390e451 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Jun 6 10:18:17 2025 +0200 ♻️ Adding missing signatures commit 9b6cd4d Merge: 5ab8421 c2768e6 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Jun 4 11:46:45 2025 +0200 Merge remote-tracking branch 'origin/develop' into feature/rey/negative-pressure-cells commit 5ab8421 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Jun 4 11:46:15 2025 +0200 ✨ adding ranks separator titles commit 6a43cb9 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Jun 3 18:24:38 2025 +0200 ✨ finishing MPI tables with a different approach (log output on rank0 only) commit 6487d6c Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon Jun 2 14:13:33 2025 +0200 ✨ 🧪 first attempt at creating MPI tables commit 854dc3e Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed May 28 14:34:17 2025 +0200 ♻️ minor refactor of TableFormatter.cpp commit 66f2d72 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed May 28 14:33:57 2025 +0200 ✨ adding info to warn the user to increase a logLevel to get the report commit 4a9f780 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed May 28 14:16:22 2025 +0200 ✨extending reported data to pressure/density (IdReporter -> ElementReporter) commit 00d8c57 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed May 28 11:00:31 2025 +0200 ⚰️ dead code commit da89daf Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue May 27 17:09:02 2025 +0200 💄 new table format commit e7f73cf Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon May 26 17:49:19 2025 +0200 ✨ offering control on alignement when using columns-free table layouts commit 3fd0c12 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon May 26 17:48:52 2025 +0200 ♻️ 🐛 simplifying & fixing visible columns counting commit 8f68eb5 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon May 26 17:47:25 2025 +0200 ♻️ refactoring TableFormatter: give control to inheriting classes commit 5744a2a Merge: 58d1dce ef5e940 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon May 26 14:06:10 2025 +0200 Merge remote-tracking branch 'origin/develop' into feature/rey/negative-pressure-cells commit 58d1dce Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon May 26 11:52:38 2025 +0200 ♻️ refactoring TableFormatter: give control to inheriting classes commit 3eb2293 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon May 26 11:48:38 2025 +0200 ♻️ removing double assessor + exposing non-const version commit 5fc7ea6 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri May 23 12:28:09 2025 +0200 ✨ adding support for no column titled table layout commit 47f5c5c Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri May 23 11:09:44 2025 +0200 ✨ adding table indentation commit de506c6 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri May 23 10:09:42 2025 +0200 ✨ adding table formatting to allow for showing more data commit 0803a92 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu May 22 16:53:04 2025 +0200 🐛 CUDA crash fix + bug fix (data not moved from device) commit d29db45 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue May 20 17:42:52 2025 +0200 🐛 adding one more barrier to not get the msg cut by other msgs. commit e0b104d Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue May 20 17:22:31 2025 +0200 💄 msg slight rewriting commit 3f97e2b Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue May 20 14:33:40 2025 +0200 🐛 fix for a CUDA target: explicit constructor call commit 6766e7e Merge: 056ac9c 5a65081 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue May 20 11:37:03 2025 +0200 Merge remote-tracking branch 'origin/develop' into feature/rey/negative-pressure-cells commit 056ac9c Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue May 20 11:29:21 2025 +0200 ✨ implementation of neg pressure ids output on other models commit 18703e3 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue May 20 11:28:20 2025 +0200 ♻️ refactors to prevent computing mpi reduction twice + constness + naming commit 14a546f Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon May 19 16:10:47 2025 +0200 💄 adding msg precisions commit 4ebe330 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon May 19 15:48:26 2025 +0200 💄 slight msg change / fix 2 commit 5cf6814 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon May 19 15:40:18 2025 +0200 💄 slight msg change / fix commit 96cd0a8 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri May 16 18:10:08 2025 +0200 ✨ activation de l'output des valeurs problématique en f° d'un nouveau logLevel "SolutionDetails" commit cb0ae03 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri May 16 12:34:53 2025 +0200 ♻️ proper cpp/hpp file repartition commit 1434bd3 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri May 16 12:09:57 2025 +0200 ♻️ removing unnecessary template commit 8d158fc Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri May 16 11:56:59 2025 +0200 ✨ added the IdReporter classes to facilitate outputing ids & their count from kernels (optionally) commit 76f4644 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed May 7 18:24:23 2025 +0200 💩 first attempt at outputing wrong cells in multiphase cases... work on CPU but doesn't on GPU build + suboptimal

commit 85f63a9 Author: arng40 <arnaud.dudes@capgemini.com> Date: Thu Mar 19 15:07:51 2026 +0100 :recycle: gathering method for tableData

commit 1583882 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 19 17:22:57 2026 +0100 🚧 wipwipwip commit 85f63a9 Author: arng40 <arnaud.dudes@capgemini.com> Date: Thu Mar 19 15:07:51 2026 +0100 :recycle: gathering method for tableData

MelReyCG · 2026-03-27T15:13:58Z

src/coreComponents/mesh/PerforationFields.hpp

               "reservoirElementGlobalIndex",
               array1d< globalIndex >,
-               0,
+               -1,


Why do you need it? Is it safe? It scares me :D

MelReyCG · 2026-03-27T15:51:11Z

src/coreComponents/common/format/table/unitTests/testMpiTable.cpp

+    int const rankId = MpiWrapper::commRank();
+    int const nbRanks = MpiWrapper::commSize();
+    if( nbRanks > 1 )
+    {
+      ASSERT_EQ( nbRanks, 4 );


you did not revert.. as you did, it seems like MpiWrapper::commRank() and MpiWrapper::commSize() can vary.

MelReyCG · 2026-03-27T16:30:30Z

src/coreComponents/common/format/table/TableMpiComponents.cpp

-  MpiWrapper::gather( &rankStrSize, 1, ranksStrsSizes.data(), 1, 0 );
+  stdVector< string > strsAccrossRanks;
+
+  MpiWrapper::gatherStringOnRank0( rankStr, std::function< void(string_view) >( [&]( string_view str ){


So why can I do that in #3836 ?

m_aggregator->forRegionStatistics( mesh, meshRegionsStatistics, [&] ( CellElementRegion & region, RegionStatistics & stats ) { outputRegionStats( GEOS_FMT( "Region '{}'", region.getName() ), stats ); } );

MelReyCG · 2026-03-27T16:32:17Z

src/coreComponents/common/MpiWrapper.hpp

+  template< typename CONTAINER >
+  struct GatherResult
+  {
+    // Collected data who must be trivially copyable


I don't think there will be any phylosophical debate for that kind of data: who -> which

MelReyCG · 2026-03-27T16:34:18Z

src/coreComponents/common/MpiWrapper.hpp

+  {
+    // Collected data who must be trivially copyable
+    CONTAINER data;
+    // Number of elements per row


"row"? what do you think of "rank string"?

MelReyCG · 2026-03-27T16:36:26Z

src/coreComponents/common/format/table/TableData.hpp

 }

+// Serialisation/ Deserialisation utils for common
+namespace serialBuffer


Suggested change

namespace serialBuffer

namespace basicSerialization

MelReyCG · 2026-03-27T16:40:51Z

src/coreComponents/common/format/table/TableMpiComponents.hpp

+  /**
+   * @brief Parse a string row to a TablaData cells.
+   * @param rowString The string row string to parse.
+   * @return The parsed row as a vector of CellData.
+   */
+  stdVector< TableData::CellData > parseStringRow( string_view rowString ) const;


it is now dead code isn't it?

MelReyCG · 2026-03-27T16:42:30Z

src/coreComponents/common/format/table/unitTests/testMpiTable.cpp

+      { {1, 0.502} },
+      { {2, 0.624}, {3, 0.791} },
+      {},
+      { {4, 0.243}, {5, 0.804}, {6, 0.302} },


randomize more please, they are already ordered on each rank + leave the empty one between the others

MelReyCG · 2026-03-27T16:43:16Z

src/coreComponents/common/format/table/unitTests/testMpiTable.cpp

  int const rankId = MpiWrapper::commRank();
  int const nbRanks = MpiWrapper::commSize();
-  ASSERT_EQ( nbRanks, 4 ) << "This unit test cases are designed for exactly 4 ranks to check row ordering consistency.";
-
-  for( TestCase const & testCase: testCases )
+  if( nbRanks > 1 )
  {
+    ASSERT_EQ( nbRanks, 4 );


You can use the same as in the other test.

MelReyCG · 2026-03-27T16:46:17Z

src/coreComponents/mesh/ElementRegionManager.cpp

+    formatter.setSortingFunc(
+      []( std::vector< TableData::CellData > const & row1,
+          std::vector< TableData::CellData > const & row2 ) {
+      return tabledatasorting::positiveNumberStringComp( row1[1].value, row2[1].value );


Shouldn't you sort by perforation id?

arng40 added 2 commits February 2, 2026 17:19

Merge remote-tracking branch 'origin/develop' into feat/dudes/perfora…

d764bca

…tions-table-detail

first attempt new version of log table perforation

87a4eec

arng40 self-assigned this Feb 6, 2026

doxygen + add const

5638062

arng40 added type: feature New feature or request flag: no rebaseline Does not require rebaseline labels Feb 6, 2026

arng40 marked this pull request as ready for review February 6, 2026 15:12

arng40 requested review from OmarDuran, rrsettgast and wrtobin as code owners February 6, 2026 15:12

remove logPerfo header

3b7ade4

arng40 requested a review from MelReyCG February 6, 2026 15:18

Melcx reviewed Feb 9, 2026

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arng40 added 4 commits February 10, 2026 11:46

revert modif on wellElementSubRegion

dbee251

new method to get cell id & region / subregion

b6f5ca6

wip MPI for table perfo

f10caa5

Merge remote-tracking branch 'origin/develop' into feat/dudes/perfora…

7dcac44

…tions-table-detail

castelletto1 requested a review from tjb-ltk February 13, 2026 01:04

MPI gather string - code MPI duplicate with negative pressure cell

f29df71

arng40 requested a review from corbett5 as a code owner February 13, 2026 09:46

arng40 added 2 commits February 13, 2026 10:48

Merge remote-tracking branch 'origin/develop' into feat/dudes/perfora…

673eae7

…tions-table-detail

arng40 requested a review from dkachuma as a code owner February 13, 2026 09:49

arng40 added 7 commits February 18, 2026 11:26

1st version mpi table

66863a1

new version mpi table : sorted

d6128ee

add sorting method

254f20e

extract outputLine function

4600be3

sorted mpi table

bbae597

use sorting method

77b28da

add test in invert comparator

863e969

arng40 added 13 commits March 19, 2026 17:34

🏷️ renaming & cde style

d15042d

Squashed commit of the following:

44ac609

commit 85f63a9 Author: arng40 <arnaud.dudes@capgemini.com> Date: Thu Mar 19 15:07:51 2026 +0100 :recycle: gathering method for tableData

Squashed commit of the following:

824deb6

commit 1583882 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 19 17:22:57 2026 +0100 🚧 wipwipwip commit 85f63a9 Author: arng40 <arnaud.dudes@capgemini.com> Date: Thu Mar 19 15:07:51 2026 +0100 :recycle: gathering method for tableData

🚧 serialization/deserialisation cellData

d340530

🚧 remove packing function and set custom function

78db217

🎨 add tableData serialization

6f3c199

🔨 update tableData gathering

bd75852

🔨 update reservoirElementGlobalIndex default value

d47c187

🔥 remove log

642c3b5

✨ add sorted function to tableData

17deec4

🏷️ namespace renaming

341ad11

🔒 add control for table

ff68563

🔨 fix testMPI after merge conflict

ccfbccf

arng40 removed the ci: run CUDA builds Allows to triggers (costly) CUDA jobs label Mar 26, 2026

arng40 added 15 commits March 26, 2026 11:18

🐛 Use MPI for tableData control

52cc123

⏪ revert outputLines

1eb61c0

💚 uncrustfy

d79852f

🎨 move gatherString to hpp

b045e50

⚰️ include

552229b

♻️ simplify MPI guard

47013b2

🎨 remove template

e7f1439

🏗️ create namespace for serialization

ae56cb4

🎨 Improve struct

632edd7

⚰️ remove dead code

73c7a37

⚰️ rmove serial from tableData

49d72e0

🎨 format doxy

c567f23

🐛 fix deserialisation string bug

79c9ee2

💚 fix CI build

ecef467

🚚 move declaration outside hpp

bdc15ec

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feat: Additional information on the table log perforation #3966

feat: Additional information on the table log perforation #3966
arng40 wants to merge 63 commits intodevelopfrom
feat/dudes/perforations-table-detail

arng40 commented Feb 6, 2026 •

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arng40 commented Feb 6, 2026 •

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