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@BirolLab

Birol Lab

Bioinformatics Technology Lab

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  1. ntRoot ntRoot Public

    🌳 Scalable ancestry from genomic data

    Python 12

  2. ntSynt ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    Python 106 2

  3. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 41 2

  4. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 73 10

  5. AMPlify AMPlify Public

    Attentive deep learning model for antimicrobial peptide prediction

    Python 62 14

  6. NanoSim NanoSim Public

    Nanopore sequence read simulator

    Python 298 64

Repositories

Showing 10 of 92 repositories
  • btllib Public

    📚Bioinformatics Technology Lab common code library

    BirolLab/btllib’s past year of commit activity
    C++ 29 7 25 (1 issue needs help) 8 Updated Apr 20, 2026
  • ntRoot Public

    🌳 Scalable ancestry from genomic data

    BirolLab/ntRoot’s past year of commit activity
    Python 12 GPL-3.0 0 0 0 Updated Apr 20, 2026
  • ntSynt-viz Public

    Multi-genome synteny block visualization tool

    BirolLab/ntSynt-viz’s past year of commit activity
    Python 57 GPL-3.0 4 0 0 Updated Apr 16, 2026
  • ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    BirolLab/ntSynt’s past year of commit activity
    Python 106 GPL-3.0 2 0 0 Updated Apr 16, 2026
  • triAMPh Public

    TaRget Identification of AntiMicrobial Peptides with Heterogeneous graph attention networks

    BirolLab/triAMPh’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 15, 2026
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    BirolLab/btl’s past year of commit activity
    HTML 2 3 4 0 Updated Apr 15, 2026
  • ntHash Public

    Fast hash function for DNA/RNA sequences

    BirolLab/ntHash’s past year of commit activity
    C++ 107 MIT 15 2 3 Updated Apr 2, 2026
  • RAILS Public

    🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling

    BirolLab/RAILS’s past year of commit activity
    Perl 27 GPL-3.0 5 0 0 Updated Apr 1, 2026
  • physlr Public

    ⛓️ Construct a Physical Map from Linked Reads

    BirolLab/physlr’s past year of commit activity
    Python 18 GPL-3.0 7 2 0 Updated Apr 1, 2026
  • ntLink Public

    Minimizer-based assembly scaffolding and mapping using long reads

    BirolLab/ntLink’s past year of commit activity
    Python 50 GPL-3.0 7 0 0 Updated Apr 1, 2026
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