From 2ecfb2b11e08c8eb6cafe9ea6ae7b776da622b54 Mon Sep 17 00:00:00 2001
From: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Date: Sun, 2 Aug 2026 06:03:08 +0000
Subject: [PATCH 1/3] Update from copier (2026-08-02T06:03:08)

Signed-off-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
---
 .copier-answers.yaml          |  2 +-
 .github/workflows/build.yaml  | 63 +++++++++++++++++++++++++++++++++++
 .github/workflows/copier.yaml |  7 ++--
 .github/workflows/wiki.yaml   | 18 ++++++----
 4 files changed, 79 insertions(+), 11 deletions(-)

diff --git a/.copier-answers.yaml b/.copier-answers.yaml
index 0dcc8ff..e14a9bb 100644
--- a/.copier-answers.yaml
+++ b/.copier-answers.yaml
@@ -1,5 +1,5 @@
 # Changes here will be overwritten by Copier
-_commit: c2ea129
+_commit: b2cdb6d
 _src_path: https://github.com/python-project-templates/base.git
 add_docs: false
 add_extension: python
diff --git a/.github/workflows/build.yaml b/.github/workflows/build.yaml
index b9ba5be..5f332ae 100644
--- a/.github/workflows/build.yaml
+++ b/.github/workflows/build.yaml
@@ -48,6 +48,7 @@ jobs:
             dependencies: '"pandas<2" "numpy<2" "xarray<2025.09.0" "dask<2024.7.0"'
 
     steps:
+<<<<<<< before updating
     - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
       with:
         persist-credentials: false
@@ -110,3 +111,65 @@ jobs:
         name: dist-${{matrix.os}}
         path: dist
       if: ${{ matrix.os == 'ubuntu-latest' && matrix.dependencies == '' }}
+=======
+      - name: Checkout
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
+        with:
+          persist-credentials: false
+
+      - name: Setup Python
+        uses: actions-ext/python/setup@6e1b91a408ea89f49bc8aff8724f83826f7b5446
+        with:
+          version: ${{ matrix.python-version }}
+
+      - name: Install dependencies
+        run: make develop
+
+      - name: Lint
+        run: make lint
+
+      - name: Checks
+        run: make checks
+
+      - name: Build
+        run: make build
+
+      - name: Test
+        run: make coverage
+
+      - name: Upload test results (Python)
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a  # v7.0.1
+        with:
+          name: test-results-${{ matrix.os }}-${{ matrix.python-version }}
+          path: junit.xml
+        if: ${{ always() }}
+
+      - name: Publish test results
+        uses: EnricoMi/publish-unit-test-result-action@d0a4676d0e0b938bc201470d88276b7c74c712b3  # v2.24.0
+        with:
+          files: '**/junit.xml'
+
+      - name: Upload coverage
+        uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f  # v7.0.0
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+
+      - name: Build distributions
+        run: make dist
+
+      - name: Test wheel
+        uses: actions-ext/python/test-wheel@6e1b91a408ea89f49bc8aff8724f83826f7b5446
+        with:
+          module: ccflow
+
+      - name: Test source distribution
+        uses: actions-ext/python/test-sdist@6e1b91a408ea89f49bc8aff8724f83826f7b5446
+        with:
+          module: ccflow
+
+      - name: Upload distributions
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a  # v7.0.1
+        with:
+          name: dist-${{matrix.os}}
+          path: dist
+>>>>>>> after updating
diff --git a/.github/workflows/copier.yaml b/.github/workflows/copier.yaml
index a936d5f..7171411 100644
--- a/.github/workflows/copier.yaml
+++ b/.github/workflows/copier.yaml
@@ -12,6 +12,7 @@ jobs:
       pull-requests: write
     runs-on: ubuntu-latest
     steps:
-    - uses: actions-ext/copier-update@378500315a83b5985e175139a55f1fa5ea6dde09
-      with:
-        token: ${{ secrets.WORKFLOW_TOKEN }}
+      - name: Update from Copier
+        uses: actions-ext/copier/update@2061209faa6b75ffd4fcecc0b0983772767997f4
+        with:
+          token: ${{ secrets.WORKFLOW_TOKEN }}
diff --git a/.github/workflows/wiki.yaml b/.github/workflows/wiki.yaml
index 4f80bb0..831f804 100644
--- a/.github/workflows/wiki.yaml
+++ b/.github/workflows/wiki.yaml
@@ -20,11 +20,15 @@ jobs:
   deploy:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      with:
-        persist-credentials: false
+      - name: Checkout
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
+        with:
+          persist-credentials: false
 
-    - run: cp README.md docs/wiki/Home.md
-    - uses: Andrew-Chen-Wang/github-wiki-action@1bbb4280446f9630e8e21a18012cbacf3b0f992e  # v5.0.6
-      with:
-        path: docs/wiki
+      - name: Prepare wiki
+        run: cp README.md docs/wiki/Home.md
+
+      - name: Publish wiki
+        uses: Andrew-Chen-Wang/github-wiki-action@1bbb4280446f9630e8e21a18012cbacf3b0f992e  # v5.0.6
+        with:
+          path: docs/wiki

From c70327b4ef3a4470f17e4cb803adce02b2d6c9be Mon Sep 17 00:00:00 2001
From: Tim Paine <3105306+timkpaine@users.noreply.github.com>
Date: Sun, 2 Aug 2026 16:59:05 -0400
Subject: [PATCH 2/3] Refactor GitHub Actions workflow for Python setup

---
 .github/workflows/build.yaml | 75 +++++-------------------------------
 1 file changed, 9 insertions(+), 66 deletions(-)

diff --git a/.github/workflows/build.yaml b/.github/workflows/build.yaml
index 5f332ae..13a19b8 100644
--- a/.github/workflows/build.yaml
+++ b/.github/workflows/build.yaml
@@ -48,70 +48,6 @@ jobs:
             dependencies: '"pandas<2" "numpy<2" "xarray<2025.09.0" "dask<2024.7.0"'
 
     steps:
-<<<<<<< before updating
-    - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      with:
-        persist-credentials: false
-
-    - uses: actions-ext/python/setup@6e1b91a408ea89f49bc8aff8724f83826f7b5446
-      with:
-        version: ${{ matrix.python-version }}
-
-    - name: Install dependencies
-      run: make develop
-
-    - name: Install dependency regression sets
-      run: uv pip install -U ${{ matrix.dependencies }}
-      if: matrix.dependencies != ''
-
-    - name: Lint
-      run: make lint
-
-    - name: Checks
-      run: make checks
-
-    - name: Build
-      run: make build
-
-    - name: Test
-      run: make coverage
-
-    - name: Upload test results (Python)
-      uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
-      with:
-        name: py-test-results-${{ matrix.os }}-${{ matrix.python-version }}-
-        path: junit.xml
-      if: ${{ matrix.os == 'ubuntu-latest' && matrix.dependencies == '' }}
-
-    - name: Publish Unit Test Results
-      uses: EnricoMi/publish-unit-test-result-action@d0a4676d0e0b938bc201470d88276b7c74c712b3 # v2.24.0
-      with:
-        files: '**/junit.xml'
-      if: ${{ matrix.os == 'ubuntu-latest' && matrix.dependencies == '' }}
-
-    - name: Upload coverage
-      uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f # v7.0.0
-      with:
-        token: ${{ secrets.CODECOV_TOKEN }}
-      if: ${{ matrix.os == 'ubuntu-latest' && matrix.dependencies == '' }}
-
-    - name: Twine check
-      run: make dist
-
-    - uses: actions-ext/python/test-wheel@6e1b91a408ea89f49bc8aff8724f83826f7b5446
-      with:
-        module: ccflow
-
-    - uses: actions-ext/python/test-sdist@6e1b91a408ea89f49bc8aff8724f83826f7b5446
-      with:
-        module: ccflow
-
-    - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
-      with:
-        name: dist-${{matrix.os}}
-        path: dist
-      if: ${{ matrix.os == 'ubuntu-latest' && matrix.dependencies == '' }}
-=======
       - name: Checkout
         uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
@@ -125,6 +61,10 @@ jobs:
       - name: Install dependencies
         run: make develop
 
+      - name: Install dependency regression sets
+        run: uv pip install -U ${{ matrix.dependencies }}
+        if: matrix.dependencies != ''
+
       - name: Lint
         run: make lint
 
@@ -142,12 +82,13 @@ jobs:
         with:
           name: test-results-${{ matrix.os }}-${{ matrix.python-version }}
           path: junit.xml
-        if: ${{ always() }}
+        if: ${{ matrix.dependencies == '' }}
 
       - name: Publish test results
         uses: EnricoMi/publish-unit-test-result-action@d0a4676d0e0b938bc201470d88276b7c74c712b3  # v2.24.0
         with:
           files: '**/junit.xml'
+        if: ${{ matrix.dependencies == '' }}
 
       - name: Upload coverage
         uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f  # v7.0.0
@@ -161,15 +102,17 @@ jobs:
         uses: actions-ext/python/test-wheel@6e1b91a408ea89f49bc8aff8724f83826f7b5446
         with:
           module: ccflow
+        if: ${{ matrix.dependencies == '' }}
 
       - name: Test source distribution
         uses: actions-ext/python/test-sdist@6e1b91a408ea89f49bc8aff8724f83826f7b5446
         with:
           module: ccflow
+        if: ${{ matrix.dependencies == '' }}
 
       - name: Upload distributions
         uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a  # v7.0.1
         with:
           name: dist-${{matrix.os}}
           path: dist
->>>>>>> after updating
+        if: ${{ matrix.dependencies == '' }}

From 11364e791091f4155e2ac5544261f1ad01fdcc18 Mon Sep 17 00:00:00 2001
From: Tim Paine <3105306+timkpaine@users.noreply.github.com>
Date: Sun, 2 Aug 2026 17:36:24 -0400
Subject: [PATCH 3/3] fix os exclusions

Signed-off-by: Tim Paine <3105306+timkpaine@users.noreply.github.com>
---
 .github/workflows/build.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build.yaml b/.github/workflows/build.yaml
index 13a19b8..06e8f77 100644
--- a/.github/workflows/build.yaml
+++ b/.github/workflows/build.yaml
@@ -88,7 +88,7 @@ jobs:
         uses: EnricoMi/publish-unit-test-result-action@d0a4676d0e0b938bc201470d88276b7c74c712b3  # v2.24.0
         with:
           files: '**/junit.xml'
-        if: ${{ matrix.dependencies == '' }}
+        if: ${{ matrix.os == 'ubuntu-latest' && matrix.dependencies == '' }}
 
       - name: Upload coverage
         uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f  # v7.0.0